QuPath Workshop 27th November 2019 Image What is this? This is a hands-on workshop introducing QuPath, the open source bioimage analysis & digital pathology software developed here in Edinburgh at the IGMM (https://qupath.github.io). Who is it for? The workshop is open to all researchers at the University of Edinburgh. It is geared towards people who are already using QuPath for their work, or plan to start using it soon. How can it help me? The goals of the workshop are to: Understand what QuPath can do & how to use it more effectively Learn about the very latest features currently being developed Discuss collaborations to develop new features & analysis methods How does it work? You should bring a laptop with QuPath installed. A range of brightfield and fluorescence images will be provided for practical exercises, but you are welcome to also bring your own data to discuss. How do I register? Registration fee is £50. Please email Jennifer Lawrie who will provide you with eIT details. There are limited places available for this workshop. Registration will only be completed once payment is received. What will we cover? The provisional timetable is below. It may be adapted slightly depending on the interests of participants. 9:30 Introductions Who we are & why we’re here 10:00 Getting started Viewing & annotating images in QuPath 10:45 Coffee 11:15 Cell counting Methods to detect & count cells 12:00 Classification Interactively train object classifiers 13:00 Lunch 14:00 Pixel classification The pixel classifier in QuPath v0.2.0 14:45 Batch processing Create scripts to analyse multiple images 15:15 Coffee 15:30 Discussion Tips & tricks, future plans & opportunities 16:30 End Nov 27 2019 00.00 - 23.59 QuPath Workshop 27th November 2019 Hands-on workshop introducing QuPath. Computer Suite Medical Education Centre 3rd floor of the Outpatients Building Western General Hospital Crewe Road Edinburgh EH4 2XU Getting to the Western General Hospital
QuPath Workshop 27th November 2019 Image What is this? This is a hands-on workshop introducing QuPath, the open source bioimage analysis & digital pathology software developed here in Edinburgh at the IGMM (https://qupath.github.io). Who is it for? The workshop is open to all researchers at the University of Edinburgh. It is geared towards people who are already using QuPath for their work, or plan to start using it soon. How can it help me? The goals of the workshop are to: Understand what QuPath can do & how to use it more effectively Learn about the very latest features currently being developed Discuss collaborations to develop new features & analysis methods How does it work? You should bring a laptop with QuPath installed. A range of brightfield and fluorescence images will be provided for practical exercises, but you are welcome to also bring your own data to discuss. How do I register? Registration fee is £50. Please email Jennifer Lawrie who will provide you with eIT details. There are limited places available for this workshop. Registration will only be completed once payment is received. What will we cover? The provisional timetable is below. It may be adapted slightly depending on the interests of participants. 9:30 Introductions Who we are & why we’re here 10:00 Getting started Viewing & annotating images in QuPath 10:45 Coffee 11:15 Cell counting Methods to detect & count cells 12:00 Classification Interactively train object classifiers 13:00 Lunch 14:00 Pixel classification The pixel classifier in QuPath v0.2.0 14:45 Batch processing Create scripts to analyse multiple images 15:15 Coffee 15:30 Discussion Tips & tricks, future plans & opportunities 16:30 End Nov 27 2019 00.00 - 23.59 QuPath Workshop 27th November 2019 Hands-on workshop introducing QuPath. Computer Suite Medical Education Centre 3rd floor of the Outpatients Building Western General Hospital Crewe Road Edinburgh EH4 2XU Getting to the Western General Hospital
